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Digital Tools for Researchers

There used to be a webpage called connectedresearcher.com that had the most comprehensive list of digital research tools I have ever seen.  Unfortunately, it looks like that site no longer exists. This page is my attempt to recreate it. If you have other tools you like or categories you would like to see, please reach out to me

Sourcing Papers

What I Use

Google Scholar

The power of google search applied to academic literature

Paperpile

Web based paper manager, built on top of google drive

STORK

Email notifications for new publications and grants based on the users' own keywords.

Unpaywall

Find free/open access versions of journal articles

Scite

NLP driven exploration of whether an article supports or contradicts previous research

Open Access Button

Find free/open access versions of journal articles

Other Tools

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Bibsonomy

Share bookmarks and lists of literature

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Try it out
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Data Elixer

A weekly collection of the best data science news, resources, and inspirations from around the world

Try it out
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Faculty Opinions

Experts select and share what they think is the most exciting and important research today

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Try it out
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LiteracyTool

Educational web-platform helping with the discovery, understanding, and exploration of your scientific topics of interest

Try it out
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MyScienceWork

Diffuse scientific information and knowledge in a free and accessible way

Try it out
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PubNiche

A scientific research news curator

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Research Professional

Source of intelligence on funding opportunities and research policy

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Symplur

Connecting the dots in healthcare social media

Try it out
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Wisdom.ai

create citations and bibliography and set up your research groups on the cloud to share files and references

Try it out
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DeepDyve

Instant access to the journals you need

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Try it out
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Lazy Scholar

Finds free scholarly full texts, metrics and automatic sharing of links and citations

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Try it out
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Mendeley

A social network, reference manager, and article visualizer bundled into one

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Try it out
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Paperity

A multidisiplinary aggregator of open access journals and papers

Try it out
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PubPeer

Search for publications and provide feedback and/or start a conversation anonymously

Try it out
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Sparrho

Personalized recommendation engine for science - allowing you to keep a birds eye view on all things scientific

Try it out
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Wiki Journal Club

Open User-reviewed summaries of the top studies in medical research

Try it out
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ContentMine

Uses machines to extract facts from the scientific literature

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Try it out
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Delve Health

A data collection of global clinical trials, clinical trial PI profiles, publications, and drug development pipelines

Try it out
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Labii

A suite of web apps for researchers, including an online app for finding, commenting, rating and managing research papers

Try it out
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Microsoft Academic Search

Find information about academic papers, authors, conferences, journals and organizations from multiple sources

Try it out
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Paperscape

A map of over 1 million papers published on arxiv

Try it out
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Papers App

Read, manage and discover new literature

Try it out
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SSRN

Multi-disciplinary online repository of scholarly research and related materials in social sciences

Try it out
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Zotero

Helps you collect, organize, cite, and share your research sources.

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Try it out

Connect with others

What I Use

Google Scholar

The power of google search applied to academic literature

Paperpile

Web based paper manager, built on top of google drive

STORK

Email notifications for new publications and grants based on the users' own keywords.

Unpaywall

Find free/open access versions of journal articles

Scite

NLP driven exploration of whether an article supports or contradicts previous research

Open Access Button

Find free/open access versions of journal articles

Other Tools

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Academia

A place to share and follow research and researchers

Try it out
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inospin

Platform in life science worldwide to networks, work, look up information

Try it out
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Expertnet

Helps you locate experts in florida universities

Try it out
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Kaggle

Connect with organisation in need of data prediction algorithms through open competitions for the best code

Try it out
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LifeScience.net

Online platform for professional networking and sharing of knowledge in life sciences

Try it out
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MalariaWorld

The world's scientific and social network for malaria professionals

Try it out
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nanoHub

Centralized platform for computacional nanotechnology, research, education, and collaboration

Try it out
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ResearchGate

Social network for researchers

Try it out
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Speakezee

Bringing speakers and audiences togethers

Try it out
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Addgene

Connect with other researchers through this plasmid sharing platform

Try it out
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Cureus

A free and open access medical journal and place for physicians to build a digital CV

Try it out
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Innocentive

Helps clients engage a world of creative and diverse on demand talent to rapidly generate novel ideas and solve important problems

Try it out
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LabRoots

Social network for researchers

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LinkedIn

Professional networking site for all

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Mendeley

A platform comprising of a social network, reference manager, and article visualization tools

Try it out
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Open Science Framework

Gathers a network of research documents, a version control system and a collaboration software

Try it out
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ScienceExchange

Marketplace for shared lab instrumentations

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Trellis

A digital platform that connects you to the rest of the scientific community, ran by AAAS

Try it out
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Benchling

Life science data management and collaboration platform​

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Try it out
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Direct2experts

A federated network of biomedical research expertise

Try it out
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Journal of Brief Ideas

Provides a place for short ideas to be described - in 200 words or less - archived, searchable, and citable

Try it out
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LabsExplorer

Search for R&D partners, increase your visibility and gain financing

Try it out
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Loop

Open, cross platform network for researchers and academics from the Fronteirs Journals

Try it out
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MyScienceWork

Diffuse scientific information and knowledge in a free and accessible way

Try it out
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Profology

A professional community created excusively for higher education faculty, staff and administrators

Try it out
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SocialScienceSpace

Social network to bring for social scientists​

Try it out
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We Share Science

A place to share, search, organize, and connect research videos across research disciplines

Try it out

Electronic Lab Notebooks

What I Use

Google Scholar

The power of google search applied to academic literature

Paperpile

Web based paper manager, built on top of google drive

STORK

Email notifications for new publications and grants based on the users' own keywords.

Unpaywall

Find free/open access versions of journal articles

Scite

NLP driven exploration of whether an article supports or contradicts previous research

Open Access Button

Find free/open access versions of journal articles

Other Tools

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Docollab

Helps you manage your scientific research, collaborate with your colleagues and publish your findings

Try it out
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Evernote

A place to collect inspirational ideas, write meaningul words, and move your important projects forward

Try it out
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LabArchives

Web based product to enable researchers to store, organize, and publish their research data

Try it out
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Laboratory Logbook

Document projects running in a lab and manage experimentally obtained data and its metadata

Try it out
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elabftw

Electronic lab notebook made by researchers, for researchers, with usability in mind

Try it out
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Findings App

Lab notebook app that allows you to organize experiemnts, keep track of results, and manage your protocols

Try it out
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Lab Folder

A simple way to document your research and to organize your protocols and data

Try it out
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SciNote

Open source lab notebook with workflows and modular functionalities

Try it out
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ELabJournal

GLP-compliant Electronic Lab Notebook and lab management tool

Try it out
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Hivebench

Hosted numeric laboratory notebook tool to manage protocols, experiments and share them with your team

Try it out
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Lab Guru

Supports day to day activities of a research group, from vision to execution, from knowledge to logistics

Try it out
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Sumatra

Automated electronic lab notebook for computational projects

Try it out

Find and Share Samples

What I Use

Google Scholar

The power of google search applied to academic literature

Paperpile

Web based paper manager, built on top of google drive

STORK

Email notifications for new publications and grants based on the users' own keywords.

Unpaywall

Find free/open access versions of journal articles

Scite

NLP driven exploration of whether an article supports or contradicts previous research

Open Access Button

Find free/open access versions of journal articles

Other Tools

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Addgene

Plasmid sharing platform

Try it out
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Biospecimins

Platform for biospecimen- based research

Try it out
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Antibody Registry

Gives researchers a way to universally identify antibodies used in the course of their research

Try it out
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ELabInventory

Web-based laboratory inventory management system designed for life science research laboratories

Try it out
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antYbuddY

An independent antibody review platform and supporting peer to peer forum

Try it out

Protocol Repository

What I Use

Google Scholar

The power of google search applied to academic literature

Paperpile

Web based paper manager, built on top of google drive

STORK

Email notifications for new publications and grants based on the users' own keywords.

Unpaywall

Find free/open access versions of journal articles

Scite

NLP driven exploration of whether an article supports or contradicts previous research

Open Access Button

Find free/open access versions of journal articles

Other Tools

bibsonomy.png

Benchfly

Video protocols and video platform for scientists

Try it out
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IPOL journal

Research journal of image processing and image analysis with algorithm descriptions and its source code

Try it out
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Pegasus

Platform that helps workflow-based applications execute

Try it out
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Protocol Online

A curator of protocols contributed by researchers around the world

Try it out
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Benchling

Life science data management and collaboration platform, where you can create, find, and discuss protocols

Try it out
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MyExperiment

Share workflows and in silico experiments

Try it out
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Protocol Exchange

Open protocol repository driven by the Nature publishing group

Try it out
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Scientific Protocols

Share scientific protocols using the GitHub platform

Try it out
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Bio-Protocol

Online peer-reviewed protocol journal

Try it out
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OpenWetWare

Share information, know-how, wisdom, and protocols among researchers working in biological fields

Try it out
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Protocols

Crowdsourced universal protocol repository

Try it out

Work with data

What I Use

Google Scholar

The power of google search applied to academic literature

Paperpile

Web based paper manager, built on top of google drive

STORK

Email notifications for new publications and grants based on the users' own keywords.

Unpaywall

Find free/open access versions of journal articles

Scite

NLP driven exploration of whether an article supports or contradicts previous research

Open Access Button

Find free/open access versions of journal articles

Other Tools

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Castor EDC

User friendly and affordable online data collection for medical research

Try it out
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Dat data

Open source, decentralized data tool for distributing datasets small and large

Try it out
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GenePattern

Genomic analysis platform that provides access to hundreds of genomics tools

Try it out
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Kitware

Advanced software solutons and services for data intensive R&D

Try it out
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nanoHUB

Centralized platform for computational nanotechnology research, education, and collaboration

Try it out
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Pegasus

Platform that helps workflow-based applications execute

Try it out
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ROpenSci

Packages that allow access to data repositories through the R studio programming environment

Try it out
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SURF in context

Navigate through RDF relations in a smooth and comprehensible way

Try it out
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Taverna

A suite of tools used to design and execute scientific workflows

Try it out
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Wings

Semantic workflow system that assists scientists with the design of computational experiments

Try it out
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Benchling

Life science data management and collaboration platform

Try it out
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Delve Health

Comprehensive source of real-time intelligence focused on life science research industry

Try it out
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TwistBioscience

Silicon-based DNA writing platform that provides access to high quality oligonucleotides, genes, and libraries

Try it out
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mloss

Machine Learning open source software

Try it out
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Ovation

Simplifies your scientific life from sample tracking for startup labs to data management

Try it out
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Plotly

Online tool to graph and share data

Try it out
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Statcrunch

Provides data analysis via the web

Try it out
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Synapse

Platform to support open, collaborative data analysis for clear, reproducible science

Try it out
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VisTrails

Scientific workflow and provenance management system that supports data exploration and visualization

Try it out
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Wolfram Alpha

Web-based tools for scientific calculations

Try it out
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Datazar

Research collaboration platform where you can easily explore, use and share data

Try it out
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Galaxy Project

Web-based platform for data intensive biomedical research

Try it out
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Kaggle

Platform for data prediction competitions

Try it out
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MyExperiment

Share workflows and in silico experiments

Try it out
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PCR Drive

Free platform that supports researchers in all their PCR-related processes

Try it out
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Riffyn

Cloud software for visual, collaborative, reproducible innovation

Try it out
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Sumatra

Automated electronic lab notebook for computational projects

Try it out
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Tableau

Easily and quickly analyze and present data and share insights

Try it out
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WebPlotDigitizer

Web based tool to extract data from plots, images, and maps

Try it out
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World Map

Allows users to explore, visualize, edit, collaborate with, and publish geospatial information

Try it out

Work with data

What I Use

Google Scholar

The power of google search applied to academic literature

Paperpile

Web based paper manager, built on top of google drive

STORK

Email notifications for new publications and grants based on the users' own keywords.

Unpaywall

Find free/open access versions of journal articles

Scite

NLP driven exploration of whether an article supports or contradicts previous research

Open Access Button

Find free/open access versions of journal articles

Other Tools

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CitationStyles

Find and edit CSL citation styles

Try it out
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EndNote

Software tool for publishing and managing bibliographies, citations and references

Try it out
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Paperpile

No-fuss reference management for the web

Try it out
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Citavi

Reference management, knowledge organization, and task planning solution

Try it out
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Sciwheel

A workspace for scientists to collect, write and discuss scientific literature

Try it out
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Papers

Helps you collect and curate the research material that you are passionate about

Try it out
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wisdom.ai

Create citations and bibliography and set up your research groups on the cloud to share files and references

Try it out
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Mendeley

A unique platform comprising a social network, reference manager, and article visualization tools

Try it out
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Zotero

Helps you collect, organize, cite, and share your research sources

Try it out
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